Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_17940Conserved hypothetical protein. (449 aa)    
Predicted Functional Partners:
Rta_17950
Salicylate hydroxylase (Salicylate 1-monooxygenase)-like protein.
     
 0.774
bkdA2
Candidate 2-oxoisovalerate dehydrogenase, beta subunit.
  
 0.763
pdhB
Candidate pyruvate dehydrogenase E1 component, beta subunit.
  
 0.763
sucA
Candidate 2-oxoglutarate dehydrogenase E1 component (Alpha- ketoglutarate dehydrogenase).
  
 0.741
Rta_17930
Gentisate 1,2-dioxygenase-like protein.
     
 0.710
Rta_17920
Conserved hypothetical protein.
  
    0.708
Rta_37850
Bifunctional protein : malic enzyme; phosphate acetyltransferase (phosphotransacetylase)-like protein; Belongs to the malic enzymes family.
  
 
 0.685
bkdB
Candidate Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex.
  
 0.682
aceF
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
  
 0.682
Rta_18700
Candidate dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase).
  
 0.682
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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