Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_17970Conserved hypothetical protein. (223 aa)    
Predicted Functional Partners:
Rta_29720
Candidate translocation protein in type III secretion, membrane protein.
  
 
 
 0.612
tolB
Candidate TolB protein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.533
Rta_17960
Transcriptional regulator, MarR family-like protein.
       0.523
skp
Candidate Outer membrane protein periplasmic chaperone OmpH; Belongs to the skp family.
  
 
 0.510
Rta_17940
Conserved hypothetical protein.
 
   
 0.477
Rta_29680
Candidate translocation protein in type III secretion, membrane protein.
  
     0.426
Rta_17950
Salicylate hydroxylase (Salicylate 1-monooxygenase)-like protein.
     
 0.424
Rta_29780
Peptidoglycan lytic transglycosylase, Glycoside Hydrolase Family 23-like protein.
  
     0.420
Rta_04600
Conserved hypothetical protein.
 
 
 0.412
Rta_18710
Conserved hypothetical protein.
 
 
 0.408
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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