Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_18060Conserved hypothetical protein. (143 aa)    
Predicted Functional Partners:
Rta_18070
Candidate maleylacetoacetate isomerase.
 
     0.712
Rta_18050
Conserved hypothetical protein.
 
     0.709
Rta_18080
Conserved hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
  
    0.669
Rta_18040
Conserved hypothetical protein.
 
     0.612
gltB
Candidate Ferredoxin-dependent glutamate synthase.
     
 0.516
Rta_18010
Transcriptional regulator, GntR family-like protein.
       0.426
azlC
Candidate branched chain amino acid permease, azaleucine resistance.
       0.426
Rta_18030
Candidate membrane protein.
       0.426
Rta_11270
Conserved hypothetical protein.
  
     0.423
Rta_16710
Acetohydroxy-acid synthase small subunit; Belongs to the TPP enzyme family.
  
     0.417
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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