Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_18070Candidate maleylacetoacetate isomerase. (213 aa)    
Predicted Functional Partners:
Rta_36540
Conserved hypothetical protein.
 
 
 0.973
Rta_21750
Candidate maleylacetoacetate isomerase.
  
  
 
0.912
Rta_05500
Candidate 4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.845
Rta_18080
Conserved hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.835
Rta_18060
Conserved hypothetical protein.
 
     0.712
phhA
Candidate phenylalanine 4-monooxygenase (Phenylalanine-4-hydroxylase).
 
  
 0.708
rpoC
Candidate DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.629
sspA
Candidate Stringent starvation protein A.
    
 
 0.623
rpoD
Candidate RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.598
rpoB
Candidate DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.563
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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