Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_18240Candidate LAO/AO transport system kinase. (332 aa)    
Predicted Functional Partners:
Rta_18230
Candidate methylmalonyl-CoA mutase.
 
 0.999
icmF
Candidate methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
 
 
0.981
Rta_18250
Candidate propionyl-CoA carboxylase.
 
   
 0.909
Rta_18280
Conserved hypothetical protein.
 
  
 0.733
accA-2
Candidate Acetyl or propionyl-CoA carboxylase subunit.
       0.708
Rta_18260
Conserved hypothetical protein.
       0.655
Rta_18290
1-aminocyclopropane-1-carboxylate deaminase-like protein.
     
 0.602
Rta_18220
Transcriptional regulator, GntR family-like protein.
       0.566
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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