Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_18760vinylacetyl-CoA delta-isomerase-like protein. (550 aa)    
Predicted Functional Partners:
Rta_05720
Unsaturated acyl-CoA reductaseButyryl dehydrogenase.
 
  
 0.918
Rta_34370
Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  
  0.915
hpcB
Candidate 3,4-dihydroxyphenylacetate 2,3-dioxygenase.
  
 
 0.594
Rta_36530
Hypothetical protein.
  
     0.594
Rta_18770
Conserved hypothetical protein.
       0.585
prpE
Candidate propionate--CoA ligase (Propionyl-CoA synthetase).
       0.492
Rta_29470
Hypothetical protein.
  
     0.491
Rta_21960
Conserved hypothetical protein.
  
     0.451
Rta_30140
Permease component of an ABC transporteur-like protein.
  
     0.423
Rta_35970
Conserved hypothetical protein.
  
     0.420
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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