Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Rta_19200Conserved hypothetical protein; Belongs to the UPF0311 family. (155 aa)    
Predicted Functional Partners:
Rta_24990
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase-like protein.
 
  
 0.741
chrA
Candidate chromate transport protein, half length.
       0.671
chrA-2
Candidate chromate transport protein, half length.
       0.671
Rta_25010
long-chain-fatty-acid--CoA ligase-like protein.
  
   
 0.644
Rta_19230
Bifunctional protein : transcriptional regulator, MarR family; N-acetyltransferase-like protein.
  
 
 0.464
pobA
Candidate P-hydroxybenzoate hydroxylase (4-hydroxybenzoate 3- monooxygenase).
  
     0.444
Rta_14540
Cytochromes P450-like protein.
  
 
 0.434
Rta_18560
Conserved hypothetical protein.
  
   0.427
ubiB
Candidate 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.
   
 0.413
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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