Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_19250Conserved hypothetical protein. (92 aa)    
Predicted Functional Partners:
ctaD
Candidate Cytochrome c oxidase polypeptide I (Cytochrome AA3 subunit 1).
  
 
 0.968
Rta_19240
Sulfite oxidase-like protein.
 
 
 
 0.933
ctaC
Candidate Cytochrome c oxidase polypeptide II precursor (Cytochrome aa3 subunit 2).
  
 
 0.929
Rta_06270
Candidate Cytochrome c-type protein.
  
 
 0.891
petB
Candidate cytochrome b, membrane protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.858
Rta_30600
Formate dehydrogenase beta subunit; NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit and subunit 1 or 51 kDa subunit fusion, chain E and chain F fusion-like protein.
   
 
 0.856
Rta_08580
Candidate molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.749
ctaE
Oxidase AA(3) subunit 3; membrane protein.
  
 
 0.748
Rta_13820
Conserved hypothetical protein.
   
 
 0.744
Rta_16140
Conserved hypothetical protein.
  
 
 0.737
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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