Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_19410Candidate permease. (378 aa)    
Predicted Functional Partners:
Rta_19400
Candidate membrane protein.
 
 0.999
Rta_02820
Candidate ATP-binding component of an ABC transporter, unknown function.
   
 0.979
kdsC
Candidate 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase.
 
 
 0.938
lptD
Organic solvent tolerance protein precursor-like protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
  
 0.841
Rta_19390
Conserved hypothetical protein.
  
    0.810
cysB
Candidate transcriptional regulator CysB (Cys regulon transcriptional activator), LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.733
holC
Candidate DNA polymerase III, chi subunit.
 
     0.706
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
       0.683
bamE
Outer membrane lipoprotein omlA precursor-like protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.681
Rta_19370
Aminotransferases-like protein.
       0.662
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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