Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_19500Arginine/lysine/ornithine decarboxylases-like protein. (754 aa)    
Predicted Functional Partners:
Rta_04320
Candidate Arginase; Belongs to the arginase family.
    
 0.937
argH
Candidate argininosuccinate lyase (Arginosuccinase).
     
 0.826
Rta_19490
Conserved hypothetical protein.
 
     0.671
Rta_24520
Conserved hypothetical protein.
  
     0.652
efp
Candidate elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
 
   
 0.602
Rta_19480
Conserved hypothetical protein.
  
    0.520
Rta_31950
Spermidine synthase (Putrescine aminopropyltransferase)-like protein.
  
  
 0.491
Rta_25220
MoxR protein-like protein.
   
 
 0.456
Rta_31990
ATPases-like protein.
   
 
 0.456
Rta_32180
MoxR ATPases-like protein.
   
 
 0.456
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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