Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_19530Candidate ABC type oligopeptide transport system, permease component. (340 aa)    
Predicted Functional Partners:
Rta_19520
Candidate ABC type oligopeptide transport system, periplasmic component.
 
  
 0.970
Rta_19540
Candidate ABC type oligopeptide transport system, permease component.
  
 0.966
Rta_19550
Candidate ABC type oligopeptide transport system, ATP-binding component with duplicated domains; Belongs to the ABC transporter superfamily.
 
  
 0.953
dppC
Candidate ABC type dipeptide/oligopeptide transport system, permease component.
     0.783
Rta_33340
Candidate ABC type dipeptide/oligopeptide transport system, permease component.
     0.768
Rta_33350
Candidate ABC type dipeptide/oligopeptide transport system, ATP-binding component; Belongs to the ABC transporter superfamily.
 
   
 0.758
Rta_33360
Candidate ABC type dipeptide/oligopeptide transport system, ATP-binding component.
 
     0.728
dppD
Candidate ABC type dipeptide/oligopeptide transport system, ATP-binding component; Belongs to the ABC transporter superfamily.
 
   
 0.707
Rta_35200
Candidate ABC type dipeptide/oligopeptide transport system, ATP-binding component; Belongs to the ABC transporter superfamily.
 
   
 0.673
fabI
Candidate Enoyl-[acyl-carrier-protein] reductase (NADH).
  
    0.642
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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