Rta_19650 protein (Ramlibacter tataouinensis)

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Score

Rta_19650

Candidate membrane protein. (153 aa)

Predicted Functional Partners:

smpB

0.727

Rta_36860

0.615

Rta_19670

0.536

Rta_19680

0.536

Rta_35580

0.528

Rta_37650

0.467

Your Current Organism:

Ramlibacter tataouinensis

NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Rta_19650	Rta_19670	Rta_19650	Rta_19670	Candidate membrane protein.	Conserved hypothetical protein.	0.536
Rta_19650	Rta_19680	Rta_19650	Rta_19680	Candidate membrane protein.	Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family.	0.536
Rta_19650	Rta_35580	Rta_19650	Rta_35580	Candidate membrane protein.	Transcriptional regulator, AraC family-like protein.	0.528
Rta_19650	Rta_36860	Rta_19650	Rta_36860	Candidate membrane protein.	Conserved hypothetical protein.	0.615
Rta_19650	Rta_37650	Rta_19650	Rta_37650	Candidate membrane protein.	Oxidoreductases-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.467
Rta_19650	smpB	Rta_19650	Rta_19660	Candidate membrane protein.	Candidate small protein B (SsrA-binding protein); Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. T [...]	0.727
Rta_19670	Rta_19650	Rta_19670	Rta_19650	Conserved hypothetical protein.	Candidate membrane protein.	0.536
Rta_19670	Rta_19680	Rta_19670	Rta_19680	Conserved hypothetical protein.	Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family.	0.926
Rta_19670	smpB	Rta_19670	Rta_19660	Conserved hypothetical protein.	Candidate small protein B (SsrA-binding protein); Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. T [...]	0.695
Rta_19680	Rta_19650	Rta_19680	Rta_19650	Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family.	Candidate membrane protein.	0.536
Rta_19680	Rta_19670	Rta_19680	Rta_19670	Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family.	Conserved hypothetical protein.	0.926
Rta_19680	smpB	Rta_19680	Rta_19660	Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family.	Candidate small protein B (SsrA-binding protein); Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. T [...]	0.677
Rta_35580	Rta_19650	Rta_35580	Rta_19650	Transcriptional regulator, AraC family-like protein.	Candidate membrane protein.	0.528
Rta_35580	Rta_37650	Rta_35580	Rta_37650	Transcriptional regulator, AraC family-like protein.	Oxidoreductases-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.621
Rta_36860	Rta_19650	Rta_36860	Rta_19650	Conserved hypothetical protein.	Candidate membrane protein.	0.615
Rta_37650	Rta_19650	Rta_37650	Rta_19650	Oxidoreductases-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Candidate membrane protein.	0.467
Rta_37650	Rta_35580	Rta_37650	Rta_35580	Oxidoreductases-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Transcriptional regulator, AraC family-like protein.	0.621
smpB	Rta_19650	Rta_19660	Rta_19650	Candidate small protein B (SsrA-binding protein); Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. T [...]	Candidate membrane protein.	0.727
smpB	Rta_19670	Rta_19660	Rta_19670	Candidate small protein B (SsrA-binding protein); Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. T [...]	Conserved hypothetical protein.	0.695
smpB	Rta_19680	Rta_19660	Rta_19680	Candidate small protein B (SsrA-binding protein); Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. T [...]	Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family.	0.677

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