| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplC | rplD | Rta_03260 | Rta_03270 | Candidate 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
| rplC | rplS | Rta_03260 | Rta_12130 | Candidate 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Candidate 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.987 |
| rplC | rplT | Rta_03260 | Rta_17800 | Candidate 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Candidate 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.990 |
| rplC | rpmA | Rta_03260 | Rta_29110 | Candidate 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Candidate 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.989 |
| rplC | rpsB | Rta_03260 | Rta_17430 | Candidate 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Candidate 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.989 |
| rplC | rpsD | Rta_03260 | Rta_36060 | Candidate 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Candidate 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.988 |
| rplC | rpsG | Rta_03260 | Rta_03220 | Candidate 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Candidate 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.992 |
| rplC | rpsO | Rta_03260 | Rta_26480 | Candidate 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Candidate 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.984 |
| rplC | rpsR | Rta_03260 | Rta_24110 | Candidate 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Candidate ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.985 |
| rplC | smpB | Rta_03260 | Rta_19660 | Candidate 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Candidate small protein B (SsrA-binding protein); Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. T [...] | 0.896 |
| rplD | rplC | Rta_03270 | Rta_03260 | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Candidate 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.999 |
| rplD | rplS | Rta_03270 | Rta_12130 | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Candidate 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.985 |
| rplD | rplT | Rta_03270 | Rta_17800 | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Candidate 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.985 |
| rplD | rpmA | Rta_03270 | Rta_29110 | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Candidate 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.984 |
| rplD | rpsB | Rta_03270 | Rta_17430 | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Candidate 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.994 |
| rplD | rpsD | Rta_03270 | Rta_36060 | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Candidate 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.995 |
| rplD | rpsG | Rta_03270 | Rta_03220 | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Candidate 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.995 |
| rplD | rpsO | Rta_03270 | Rta_26480 | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Candidate 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.989 |
| rplD | rpsR | Rta_03270 | Rta_24110 | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Candidate ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.987 |
| rplD | smpB | Rta_03270 | Rta_19660 | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Candidate small protein B (SsrA-binding protein); Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. T [...] | 0.897 |
