node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rta_07880 | Rta_19680 | Rta_07880 | Rta_19680 | Candidate Cytochrome c4 precursor. | Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family. | 0.471 |
Rta_18315 | Rta_19680 | Rta_18315 | Rta_19680 | Conserved hypothetical protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family. | 0.655 |
Rta_19650 | Rta_19670 | Rta_19650 | Rta_19670 | Candidate membrane protein. | Conserved hypothetical protein. | 0.536 |
Rta_19650 | Rta_19680 | Rta_19650 | Rta_19680 | Candidate membrane protein. | Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family. | 0.536 |
Rta_19650 | smpB | Rta_19650 | Rta_19660 | Candidate membrane protein. | Candidate small protein B (SsrA-binding protein); Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. T [...] | 0.727 |
Rta_19670 | Rta_19650 | Rta_19670 | Rta_19650 | Conserved hypothetical protein. | Candidate membrane protein. | 0.536 |
Rta_19670 | Rta_19680 | Rta_19670 | Rta_19680 | Conserved hypothetical protein. | Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family. | 0.925 |
Rta_19670 | smpB | Rta_19670 | Rta_19660 | Conserved hypothetical protein. | Candidate small protein B (SsrA-binding protein); Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. T [...] | 0.680 |
Rta_19680 | Rta_07880 | Rta_19680 | Rta_07880 | Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family. | Candidate Cytochrome c4 precursor. | 0.471 |
Rta_19680 | Rta_18315 | Rta_19680 | Rta_18315 | Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family. | Conserved hypothetical protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.655 |
Rta_19680 | Rta_19650 | Rta_19680 | Rta_19650 | Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family. | Candidate membrane protein. | 0.536 |
Rta_19680 | Rta_19670 | Rta_19680 | Rta_19670 | Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family. | Conserved hypothetical protein. | 0.925 |
Rta_19680 | Rta_28250 | Rta_19680 | Rta_28250 | Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family. | Conserved hypothetical protein. | 0.526 |
Rta_19680 | cca | Rta_19680 | Rta_07360 | Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family. | Candidate tRNA nucleotidyltransferase (tRNA adenylyltransferase); Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | 0.527 |
Rta_19680 | lptD | Rta_19680 | Rta_37900 | Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family. | Organic solvent tolerance protein precursor-like protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.409 |
Rta_19680 | smpB | Rta_19680 | Rta_19660 | Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family. | Candidate small protein B (SsrA-binding protein); Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. T [...] | 0.661 |
Rta_19680 | zapD | Rta_19680 | Rta_29180 | Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family. | Conserved hypothetical protein; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity. | 0.491 |
Rta_28250 | Rta_19680 | Rta_28250 | Rta_19680 | Conserved hypothetical protein. | Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family. | 0.526 |
Rta_28250 | zapD | Rta_28250 | Rta_29180 | Conserved hypothetical protein. | Conserved hypothetical protein; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity. | 0.543 |
cca | Rta_19680 | Rta_07360 | Rta_19680 | Candidate tRNA nucleotidyltransferase (tRNA adenylyltransferase); Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | Conserved hypothetical protein; Belongs to the UPF0125 (RnfH) family. | 0.527 |