Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_19740Conserved hypothetical protein. (357 aa)    
Predicted Functional Partners:
Rta_19750
Transcriptional regulator, Neg_reg family-like protein.
       0.538
Rta_19760
Hypothetical protein.
       0.538
Rta_18040
Conserved hypothetical protein.
  
     0.470
tadA
Candidate bifunctional protein : haloalkane dehalogenase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.470
Rta_18050
Conserved hypothetical protein.
  
     0.454
Rta_19780
Muramoyltetrapeptide carboxypeptidase (LD- carboxypeptidase A)-like protein.
       0.437
Rta_25980
Candidate salicylate-5-hydroxylase small oxygenase component.
  
     0.416
Rta_17930
Gentisate 1,2-dioxygenase-like protein.
  
     0.400
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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