Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_19800Candidate ankyrin repeat harboring protein. (219 aa)    
Predicted Functional Partners:
Rta_19810
Deoxyribonuclease-like protein.
 
     0.816
Rta_04690
Conserved hypothetical protein.
  
     0.745
Rta_00880
Conserved hypothetical protein.
    
 0.717
Rta_37520
Proteins containing SET domain-like protein.
  
 
 0.711
Rta_23560
Candidate glycerol uptake facilitator or water-selective channels; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 0.656
Rta_01300
ATPase protein, AAA family-like protein.
    
 0.655
Rta_32230
FlbA protein-like protein.
 
 0.647
Rta_19820
Candidate type 4 fimbrial biogenesis protein PilZ.
       0.627
tmk
Candidate thymidylate kinase (dTMP kinase); Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
 
 
 
 0.606
Rta_30450
Candidate membrane protein.
  
 0.602
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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