Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_19990NADP-dependent oxidoreductases-like protein. (338 aa)    
Predicted Functional Partners:
Rta_19980
Conserved hypothetical protein.
 
   
 0.781
Rta_19960
Conserved hypothetical protein.
 
    0.770
Rta_19970
acyl-CoA dehydrogenases-like protein.
       0.741
Rta_22070
Conserved hypothetical protein.
 
    0.720
Rta_20000
Conserved hypothetical protein.
  
    0.713
Rta_20010
Gluconate 5-dehydrogenase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   0.708
Rta_19950
Methylated DNA-protein cysteine methyltransferase-like protein.
       0.707
Rta_20050
3-hydroxybutyryl-CoA epimerase-like protein.
 
 
 0.706
Rta_20040
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
    0.697
Rta_20020
Hypothetical protein.
       0.689
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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