Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_20170Hypothetical protein. (96 aa)    
Predicted Functional Partners:
Rta_20140
Candidate histidine kinase, atypical hybrid.
       0.578
Rta_20150
Candidate histidine kinase, atypical unorthodox.
       0.578
Rta_20160
Hypothetical protein.
       0.578
msrB
Candidate peptide methionine sulfoxide reductase (protein-methionine-S-oxide reductase); Belongs to the MsrB Met sulfoxide reductase family.
       0.403
Rta_20190
Intracellular septation protein-like protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
       0.403
Rta_20200
BolA protein-like protein; Belongs to the BolA/IbaG family.
       0.400
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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