Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Rta_20260Periplasmic component of an ABC type amino acid transport system-like protein. (264 aa)    
Predicted Functional Partners:
Rta_20250
Conserved hypothetical protein; Belongs to the UPF0173 family.
       0.773
tctC-40
Candidate extracytoplasmic binding receptor.
       0.592
Rta_20280
Gamma-glutamyltranspeptidase precursor (Gamma-glutamyltransferase)-like protein.
       0.592
Rta_20240
Candidate membrane protein.
       0.532
Rta_31760
Conserved hypothetical protein.
  
    0.527
Rta_19460
Candidate histidine kinase, atypical hybrid.
   
 
 0.439
argG
Candidate argininosuccinate synthase (Citrulline--aspartate ligase); Belongs to the argininosuccinate synthase family. Type 2 subfamily.
 
  
 0.438
Rta_09390
Candidate ABC type amino acid transport system, permease component.
 
 
 0.422
Rta_05190
Candidate ABC type amino acid transport system, permease component.
 
 
 0.410
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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