| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| def | hprA | Rta_20400 | Rta_20410 | Candidate peptide deformylase (Polypeptide deformylase); Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Candidate ATP-dependent helicase. | 0.773 |
| def | rplD | Rta_20400 | Rta_03270 | Candidate peptide deformylase (Polypeptide deformylase); Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.762 |
| def | rplI | Rta_20400 | Rta_24100 | Candidate peptide deformylase (Polypeptide deformylase); Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.774 |
| def | rplM | Rta_20400 | Rta_07010 | Candidate peptide deformylase (Polypeptide deformylase); Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Candidate 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.766 |
| def | rplT | Rta_20400 | Rta_17800 | Candidate peptide deformylase (Polypeptide deformylase); Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Candidate 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.778 |
| def | rplU | Rta_20400 | Rta_29120 | Candidate peptide deformylase (Polypeptide deformylase); Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Candidate 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.815 |
| def | rplV | Rta_20400 | Rta_03310 | Candidate peptide deformylase (Polypeptide deformylase); Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Candidate 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.795 |
| def | rplY | Rta_20400 | Rta_33290 | Candidate peptide deformylase (Polypeptide deformylase); Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L25-like protein; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.762 |
| def | rpsT | Rta_20400 | Rta_27850 | Candidate peptide deformylase (Polypeptide deformylase); Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Candidate Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.763 |
| def | tig | Rta_20400 | Rta_15770 | Candidate peptide deformylase (Polypeptide deformylase); Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Candidate trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.777 |
| hprA | def | Rta_20410 | Rta_20400 | Candidate ATP-dependent helicase. | Candidate peptide deformylase (Polypeptide deformylase); Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.773 |
| hprA | rplD | Rta_20410 | Rta_03270 | Candidate ATP-dependent helicase. | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.772 |
| hprA | rplM | Rta_20410 | Rta_07010 | Candidate ATP-dependent helicase. | Candidate 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.726 |
| hprA | rplV | Rta_20410 | Rta_03310 | Candidate ATP-dependent helicase. | Candidate 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.722 |
| hprA | rplY | Rta_20410 | Rta_33290 | Candidate ATP-dependent helicase. | 50S ribosomal protein L25-like protein; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.494 |
| rplD | def | Rta_03270 | Rta_20400 | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Candidate peptide deformylase (Polypeptide deformylase); Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.762 |
| rplD | hprA | Rta_03270 | Rta_20410 | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Candidate ATP-dependent helicase. | 0.772 |
| rplD | rplI | Rta_03270 | Rta_24100 | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.987 |
| rplD | rplM | Rta_03270 | Rta_07010 | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Candidate 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.993 |
| rplD | rplT | Rta_03270 | Rta_17800 | Candidate 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Candidate 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.985 |
