Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_20530Transcriptional regulator, IclR family-like protein. (252 aa)    
Predicted Functional Partners:
pobA
Candidate P-hydroxybenzoate hydroxylase (4-hydroxybenzoate 3- monooxygenase).
 
   
 0.761
Rta_14080
Transcriptional regulator, IclR family-like protein.
  
     0.759
Rta_22890
Transcriptional regulator, IclR family-like protein.
  
     0.755
Rta_12210
Transcriptional regulator, IclR family-like protein.
  
     0.743
Rta_14220
Transcriptional regulator, IclR family-like protein.
  
     0.740
Rta_36550
Transcriptional regulator, IclR family-like protein.
  
     0.731
Rta_20540
PHA-depolymerases-like protein.
       0.655
Rta_20520
Candidate peroxiredoxine.
     
 0.541
cysA
Candidate ABC type sulfate/molybdate transport systems, ATP-binding component; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
       0.503
Rta_20490
Candidate ABC type sulfate transport systems, permease component.
       0.503
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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