Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_20980Aminotransferases-like protein. (398 aa)    
Predicted Functional Partners:
dapD
Tetrahydropicolinate succinylase; Belongs to the transferase hexapeptide repeat family.
  
 
 0.983
dapE
Candidate succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
 
  
 0.976
argD
Candidate acetylornithine aminotransferase (acetylornithine transaminase); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
    
 0.908
Rta_32670
N-acetylornithinase.
    
 0.903
Rta_21000
Twitching mobility protein-like protein.
       0.743
Rta_21030
Candidate ABC transporter, ATP-binding component with duplicated domains.
  
    0.736
Rta_21020
Site-specific DNA-methyltransferase (adenine-specific)-like protein; Belongs to the protein N5-glutamine methyltransferase family.
       0.715
thrA
Candidate homoserine dehydrogenase.
 
 
 0.619
Rta_20970
3-oxoacyl-[acyl-carrier-protein] reductase-like protein; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
   
   0.570
gltB
Candidate Ferredoxin-dependent glutamate synthase.
     
 0.498
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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