Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_21000Twitching mobility protein-like protein. (384 aa)    
Predicted Functional Partners:
dapE
Candidate succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.818
Rta_21020
Site-specific DNA-methyltransferase (adenine-specific)-like protein; Belongs to the protein N5-glutamine methyltransferase family.
       0.814
pilC
Candidate type 4 fimbrial assembly protein pilC, gspF family.
 
   
 0.791
Rta_21030
Candidate ABC transporter, ATP-binding component with duplicated domains.
       0.789
gspF
Candidate general secretion pathway protein F.
 
   
 0.786
pilD
Candidate type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.786
pilM
Candidate type IV pilus assembly protein.
  
  
 0.777
gspF-2
Candidate general secretion pathway protein F, component of type II secretion system.
 
   
 0.773
Rta_20980
Aminotransferases-like protein.
       0.743
dapD
Tetrahydropicolinate succinylase; Belongs to the transferase hexapeptide repeat family.
       0.743
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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