Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_21540D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (361 aa)    
Predicted Functional Partners:
serC
Candidate phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
  
 0.958
gpmA
Candidate 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (Phosphoglyceromutase); Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
 
  
 0.907
gpmB
Candidate phosphoglycerate mutase (Phosphoglyceromutase).
    
  0.901
Rta_21560
Dihydrodipicolinate synthase-like protein; Belongs to the DapA family.
  
    0.645
tctC-42
Candidate extracytoplasmic binding receptor.
       0.636
Rta_21570
Conserved hypothetical protein.
       0.610
Rta_21530
Transcriptional regulator, GntR family-like protein.
       0.550
gltB
Candidate Ferredoxin-dependent glutamate synthase.
  
 
 0.405
thrA
Candidate homoserine dehydrogenase.
 
 
 0.401
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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