Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_21630Gamma-butyrobetaine, 2-oxoglutarate dioxygenase (Gamma-butyrobetaine hydroxylase)-like protein. (370 aa)    
Predicted Functional Partners:
tctC-43
Candidate extracytoplasmic binding receptor.
  
    0.758
Rta_21670
Candidate carboxyvinyl-carboxyphosphonate phosphorylmutase (Carboxyphosphonoenolpyruvate phosphonomutase).
  
    0.637
leuC-3
Alpha-IPM isomerase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
  
    0.635
leuD-3
Alpha-IPM isomerase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
       0.629
Rta_30410
Polyketide synthase-like protein.
 
  
 0.613
Rta_09490
Conserved hypothetical protein.
  
     0.561
Rta_30420
MelG protein (non-ribosomal peptide synthetase)-like protein.
  
  
 0.517
Rta_00210
Taurine dioxygenase-like protein.
  
     0.497
Rta_04620
Conserved hypothetical protein.
  
     0.471
Rta_21680
Transcriptional regulator, GntR family-like protein.
       0.444
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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