Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
tctC-43Candidate extracytoplasmic binding receptor. (325 aa)    
Predicted Functional Partners:
tctA
Candidate large integral membrane protein.
  
    0.833
tctA-3
Candidate large integral membrane protein.
  
    0.832
tctA-2
Candidate large integral membrane protein.
  
    0.827
Rta_21630
Gamma-butyrobetaine, 2-oxoglutarate dioxygenase (Gamma-butyrobetaine hydroxylase)-like protein.
  
    0.758
leuD-3
Alpha-IPM isomerase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
       0.642
leuC-3
Alpha-IPM isomerase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
       0.642
Rta_21670
Candidate carboxyvinyl-carboxyphosphonate phosphorylmutase (Carboxyphosphonoenolpyruvate phosphonomutase).
       0.642
Rta_21680
Transcriptional regulator, GntR family-like protein.
       0.452
tctB
Candidate small integral membrane protein.
 
    0.418
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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