Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_21710hydroxymethylglutaryl-CoA lyase (HMG-CoA lyase)-like protein; (HL) (3- hydroxy-3-methylglutarate-CoA lyase). (305 aa)    
Predicted Functional Partners:
Rta_06630
Unsaturated acyl-CoA hydratase.
 
 0.986
Rta_14810
Candidate succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (Succinyl CoA:3-oxoacid CoA-transferase).
  
 
 0.928
Rta_00980
Candidate acetoacetate--CoA ligase (Acetoacetyl-CoA synthetase).
 
 
 0.924
Rta_14820
Candidate succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (Succinyl CoA:3-oxoacid CoA-transferase).
  
 
 0.924
Rta_05680
Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.921
fadA
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.921
Rta_18100
Acetyl-CoA C-acetyltransferase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.921
Rta_20040
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.921
Rta_06670
Candidate Hydroxymethylglutaryl-CoA lyase.
  
  
 
0.913
Rta_17330
Candidate D-beta-hydroxybutyrate dehydrogenase (BDH); (3-hydroxybutyrate dehydrogenase) (3-HBDH); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
  0.913
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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