Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Rta_22300Candidate benzoyl-CoA oxygenase component B. (474 aa)    
Predicted Functional Partners:
Rta_22310
Unsaturated acyl-CoA hydratase.
 
 
 0.996
aroK-2
Bifunctional protein : transcriptional regulator, XRE family; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
   
 0.934
Rta_22340
Candidate benzoate-CoA ligase.
 
   
 0.838
Rta_14370
Conserved hypothetical protein.
 
    0.736
Rta_22350
Candidate ABC type branched chain amino acid transport systems, periplasmic component.
 
     0.719
paaB
Candidate Phenylacetic acid degradation protein.
  
 
 0.696
Rta_25010
long-chain-fatty-acid--CoA ligase-like protein.
  
   
 0.574
dctM
Candidate small permease component.
  
     0.550
Rta_22290
Hypothetical protein.
       0.538
Rta_32470
Candidate 4-hydroxybenzoyl-CoA thioesterase.
 
     0.533
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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