Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_22340Candidate benzoate-CoA ligase. (524 aa)    
Predicted Functional Partners:
Rta_22310
Unsaturated acyl-CoA hydratase.
 
 
 0.859
Rta_22300
Candidate benzoyl-CoA oxygenase component B.
 
   
 0.838
Rta_24780
Candidate 2-pyrone-4,6-dicarboxylate lactonase.
     
 0.803
aroK-2
Bifunctional protein : transcriptional regulator, XRE family; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
 
 
 0.781
Rta_22350
Candidate ABC type branched chain amino acid transport systems, periplasmic component.
 
     0.731
Rta_22330
Exoenzyme regulation regulon ORF2-like protein.
  
    0.574
Rta_14370
Conserved hypothetical protein.
  
     0.562
Rta_04940
O-succinylbenzoate--CoA ligase-like protein.
 
  0.545
Rta_22360
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
     0.527
Rta_22390
Candidate ABC type branched chain amino acid transport systems, ATP-binding component.
 
     0.520
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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