Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_22440Candidate ATP-binding component of an ABC transport system. (267 aa)    
Predicted Functional Partners:
phnI
Candidate PhnI protein.
 
 
 0.998
phnG
Candidate PhnG protein.
 
 
 0.998
phnJ
Candidate PhnJ protein; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
 0.997
phnH
Candidate PhnH protein.
 
 
 0.997
Rta_22430
Candidate ATP-binding component of an ABC transport system.
 
 
0.993
phnM
Candidate PhnM protein.
 
  
 0.983
Rta_22490
Transcriptional regulator, GntR family-like protein.
 
  
 0.951
phnN
Candidate ATP-binding protein phnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).
 
  
 0.948
Rta_22500
Conserved hypothetical protein.
 
  
 0.931
Rta_22540
Candidate ABC type phosphonate transport systems, periplasmic component.
 
  
 0.814
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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