Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_22540Candidate ABC type phosphonate transport systems, periplasmic component. (320 aa)    
Predicted Functional Partners:
Rta_22530
Candidate ABC type phosphonate transport systems, permease component.
 
 0.997
phnC
Candidate ABC type phosphonate transport systems, ATP-binding component; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
 0.995
phnC-2
Candidate ABC type phosphate/phosphonate transport systems, ATP-binding component; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
 
 0.973
Rta_33540
Candidate ABC type phosphate/phosphonate transport systems, permease component.
 
 0.963
Rta_33550
Candidate ABC type phosphate/phosphonate transport systems, permease component.
 
 0.960
Rta_33570
Candidate ABC type phosphate/phosphonate transport systems, periplasmic component.
  
  
 
0.925
Rta_22520
Conserved hypothetical protein.
 
    0.923
phnJ
Candidate PhnJ protein; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
  
 0.922
phnI
Candidate PhnI protein.
 
  
 0.909
phnH
Candidate PhnH protein.
 
  
 0.891
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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