Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
thiSCandidate ThiS protein. (67 aa)    
Predicted Functional Partners:
thiG
Candidate thiazole biosynthesis protein thiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
 
 0.994
thiE
Thiamine-phosphate synthase.
  
  
 0.968
thiD
Candidate phosphomethylpyrimidine kinase (HMP-phosphate kinase).
  
  
 0.923
Rta_30810
Candidate molybdopterin and thiamine biosynthesis protein.
  
 
 0.900
thiO
Candidate thiamine biosynthesis oxidoreductase.
  
  
 0.850
Rta_22720
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, periplasmic component.
  
    0.780
Rta_22710
3-oxoacyl-[acyl-carrier-protein] reductase-like protein; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.773
Rta_34180
Phosphomethylpyrimidine kinase (HMP-phosphate kinase)-like protein.
  
  
 0.749
Rta_22730
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component.
       0.736
Rta_22740
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component.
  
    0.720
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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