Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_22720Candidate ABC type nitrate/sulfonate/bicarbonate transport system, periplasmic component. (329 aa)    
Predicted Functional Partners:
Rta_22730
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 
 0.955
Rta_22740
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 
 0.884
Rta_32710
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 
 0.850
Rta_22750
acyl-CoA reductase-like protein.
 
    0.814
thiG
Candidate thiazole biosynthesis protein thiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
    0.784
thiE
Thiamine-phosphate synthase.
     
 0.781
thiS
Candidate ThiS protein.
  
    0.780
Rta_22760
Long-chain-fatty-acid--luciferin-component ligase (Acyl- protein synthetase)-like protein.
 
    0.778
thiO
Candidate thiamine biosynthesis oxidoreductase.
       0.777
Rta_22710
3-oxoacyl-[acyl-carrier-protein] reductase-like protein; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.773
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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