Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_22730Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component. (252 aa)    
Predicted Functional Partners:
Rta_22720
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, periplasmic component.
 
 
 0.955
Rta_22740
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 0.943
Rta_27240
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, ATP-binding component.
 
 0.889
Rta_32700
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, ATP-binding component.
 
 0.886
Rta_26590
Candidate ABC transporter probably involved in nitrate transport, ATP-binding component.
 
 0.857
Rta_22750
acyl-CoA reductase-like protein.
 
     0.826
Rta_27250
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, periplasmic component.
 
 
 0.818
Rta_22760
Long-chain-fatty-acid--luciferin-component ligase (Acyl- protein synthetase)-like protein.
       0.793
thiD
Candidate phosphomethylpyrimidine kinase (HMP-phosphate kinase).
       0.782
Rta_27260
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, periplasmic component.
 
 
 0.759
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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