Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_22760Long-chain-fatty-acid--luciferin-component ligase (Acyl- protein synthetase)-like protein. (366 aa)    
Predicted Functional Partners:
Rta_22750
acyl-CoA reductase-like protein.
 
 
 
 0.988
Rta_22730
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component.
       0.793
Rta_22720
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, periplasmic component.
 
    0.778
Rta_22740
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component.
       0.773
thiD
Candidate phosphomethylpyrimidine kinase (HMP-phosphate kinase).
       0.773
thiG
Candidate thiazole biosynthesis protein thiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
 
     0.749
Rta_22710
3-oxoacyl-[acyl-carrier-protein] reductase-like protein; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.747
thiS
Candidate ThiS protein.
       0.709
thiO
Candidate thiamine biosynthesis oxidoreductase.
       0.709
thiE
Thiamine-phosphate synthase.
       0.709
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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