Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
thiDCandidate phosphomethylpyrimidine kinase (HMP-phosphate kinase). (286 aa)    
Predicted Functional Partners:
thiE
Thiamine-phosphate synthase.
 
 0.999
thiG
Candidate thiazole biosynthesis protein thiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
 
  
 0.980
Rta_34180
Phosphomethylpyrimidine kinase (HMP-phosphate kinase)-like protein.
  
  
  0.971
thiS
Candidate ThiS protein.
  
  
 0.923
thiO
Candidate thiamine biosynthesis oxidoreductase.
 
  
 0.852
Rta_22730
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component.
       0.782
Rta_22740
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component.
       0.778
Rta_22750
acyl-CoA reductase-like protein.
       0.773
Rta_22760
Long-chain-fatty-acid--luciferin-component ligase (Acyl- protein synthetase)-like protein.
       0.773
Rta_22720
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, periplasmic component.
       0.715
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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