Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_22820Conserved hypothetical protein. (279 aa)    
Predicted Functional Partners:
Rta_22830
Candidate outer membrane protein.
 
 0.986
Rta_22810
Conserved hypothetical protein.
 
     0.939
Rta_22800
Candidate membrane protein.
 
     0.938
Rta_22840
Conserved hypothetical protein.
 
  
 0.869
Rta_11010
Outer membrane protein-like protein.
  
 0.757
Rta_26120
Candidate ABC type transport system, involved in lipoprotein release, permease component with duplicated domains.
  
  
 0.719
Rta_27740
Candidate ABC type bacteriocin/lantibiotic exporters, ATP-binding and permease domains.
  
 
 0.658
Rta_23200
Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
0.643
Rta_16500
Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.629
Rta_15750
Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
0.586
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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