Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_23070Transcriptional regulator, TetR family-like protein. (179 aa)    
Predicted Functional Partners:
Rta_23080
Conserved hypothetical protein.
 
     0.816
Rta_04100
Conserved hypothetical protein.
 
     0.592
Rta_01300
ATPase protein, AAA family-like protein.
  
     0.498
Rta_26060
Conserved hypothetical protein.
  
   
 0.491
Rta_23090
Aldehyde dehydrogenase (NAD+)-like protein; Belongs to the aldehyde dehydrogenase family.
     
 0.485
Rta_30410
Polyketide synthase-like protein.
 
   
 0.477
Rta_32420
Conserved hypothetical protein.
 
     0.457
Rta_00670
Transporter of BASS family-like protein.
  
     0.438
Rta_36530
Hypothetical protein.
  
     0.436
Rta_37660
Conserved hypothetical protein.
  
   
 0.423
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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