Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
degQ-2Candidate Protease degQ precursor. (263 aa)    
Predicted Functional Partners:
Rta_31510
Serine proteases-like protein.
  
     0.722
Rta_28470
Sigma-E factor negative regulatory protein-like protein.
  
 
 0.601
glpK
ATP:glycerol 3-phosphotransferase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.555
Rta_23240
Peptidoglycan lytic transglycosylase, Glycoside Hydrolase Family 23-like protein.
  
    0.522
gloB
Candidate hydroxyacylglutathione hydrolase (Glyoxalase II); Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
  
    0.515
Rta_04690
Conserved hypothetical protein.
  
 0.456
Rta_01630
Candidate histidine kinase, atypical unorthodox.
  
  
 0.450
pnp
Candidate polyribonucleotide nucleotidyltransferase protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
  
 0.447
Rta_19800
Candidate ankyrin repeat harboring protein.
  
 0.442
Rta_04190
Candidate histidine kinase, hybrid.
  
  
 0.437
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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