Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
trxACandidate thioredoxin 1; Belongs to the thioredoxin family. (111 aa)    
Predicted Functional Partners:
trxB
Candidate thioredoxin reductase (NADPH).
 
 0.988
Rta_11850
Disulfide oxidoreductase-like protein.
 
 
 0.911
Rta_22660
Disulfide oxidoreductase-like protein.
  
 
 0.894
nrdA
Candidate ribonucleoside-diphosphate reductase, alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 
 0.793
Rta_13470
Bifunctional protein : sensor, cNMP-binding domain-like protein.
  
 
 0.791
sodB
Candidate superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.787
Rta_29620
Disulfide oxidoreductase-like protein.
  
 
 0.774
cysH
3 - phosphoadenylylsulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
    
 
 0.752
gshB
Candidate glutathione synthetase (glutathione synthase); Belongs to the prokaryotic GSH synthase family.
   
  
 0.740
Rta_00930
Thioredoxin-disulfide reductase-like protein.
  
 
 0.736
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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