Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_23480Candidate response regulator, OmpR. (236 aa)    
Predicted Functional Partners:
Rta_23475
Candidate histidine kinase, classic.
 
 0.995
phoU
Candidate phosphate transport system protein PhoU; Plays a role in the regulation of phosphate uptake.
 
  
 0.865
pstB
Candidate ABC type phosphate transport system, ATP-binding component; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
   
 0.837
Rta_35450
Candidate histidine kinase, classic.
 
 
 0.805
Rta_01940
Candidate histidine kinase, classic.
 
 
 0.802
Rta_23510
Candidate ABC type phosphate transport system, permease component.
 
   
 0.801
Rta_23520
Candidate ABC type phosphate transport system, permease component; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
   
 0.798
Rta_34830
Candidate histidine kinase, classic.
 
 
 0.791
Rta_19460
Candidate histidine kinase, atypical hybrid.
  
 
 0.782
Rta_25390
Candidate histidine kinase, classic.
 
 
 0.777
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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