Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_23880Alcohol dehydrogenase-like protein. (326 aa)    
Predicted Functional Partners:
Rta_02980
Candidate NAD-dependent aldehyde dehydrogenase.
   
 0.913
bkdB
Candidate Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex.
   
 0.908
Rta_05720
Unsaturated acyl-CoA reductaseButyryl dehydrogenase.
  
 0.907
Rta_34370
Unsaturated acyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.907
Rta_10430
Acetyl-CoA synthase (Acetate thiokinase).
   
 
 0.906
acsA
Candidate acetyl-coenzyme A synthetase(Acetate--CoA ligase); Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 
 0.906
prpE
Candidate propionate--CoA ligase (Propionyl-CoA synthetase).
   
 
 0.906
Rta_18250
Candidate propionyl-CoA carboxylase.
     
 0.904
accA-2
Candidate Acetyl or propionyl-CoA carboxylase subunit.
     
 0.903
Rta_04750
2-hydroxy-3-oxopropionate reductase-like protein.
  
  
  0.830
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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