Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_23930Salicylate hydroxylase (Salicylate 1-monooxygenase)-like protein. (418 aa)    
Predicted Functional Partners:
Rta_11280
Candidate isoquinoline 1-oxidoreductase, alpha subunit.
  
  
 0.770
tctC-47
Candidate extracytoplasmic binding receptor.
  
    0.744
Rta_32790
Candidate ABC type branched chain amino acid transport systems, periplasmic component.
   
  
 0.683
tctC-46
Candidate extracytoplasmic binding receptor.
  
    0.545
Rta_15620
Candidate ABC type branched chain amino acid transport systems, periplasmic component.
   
    0.482
Rta_23950
Transcriptional regulator, MarR family-like protein.
 
  
 0.482
Rta_17930
Gentisate 1,2-dioxygenase-like protein.
 
   
 0.461
Rta_14540
Cytochromes P450-like protein.
  
 
 0.460
ubiB
Candidate 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.
   
 0.413
Rta_18530
Candidate ABC type branched chain amino acid transport systems, periplasmic component.
  
     0.402
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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