Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_24220Outer membrane protein precursor, TonB-dependent receptor-like protein. (703 aa)    
Predicted Functional Partners:
Rta_24230
Conserved hypothetical protein.
 
  
 0.972
Rta_24240
Candidate hydroxyacid oxidase (Glycolate oxidase).
  
    0.755
Rta_24250
Outer membrane protein precursor, TonB-dependent receptor-like protein.
 
  
0.746
Rta_29710
Candidate type III secretory apparatus protein PcrD, membrane protein.
   
    0.671
Rta_24260
Iron-regulated membrane protein-like protein.
 
  
 0.626
Rta_27720
Conserved hypothetical protein.
   
    0.625
sms
Candidate DNA repair protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
      
 0.618
acpP
Candidate Acyl-carrier-protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
      
 0.618
tonB
Candidate energy transducing system.
 
   
 0.573
Rta_30420
MelG protein (non-ribosomal peptide synthetase)-like protein.
 
  
 0.520
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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