Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_24260Iron-regulated membrane protein-like protein. (335 aa)    
Predicted Functional Partners:
Rta_24280
Thiol oxidoreductase-like protein.
  
  
 0.834
Rta_24290
Conserved hypothetical protein.
  
  
 0.805
Rta_24270
Iron-regulated protein-like protein.
  
    0.777
Rta_24300
Conserved hypothetical protein.
       0.757
Rta_24250
Outer membrane protein precursor, TonB-dependent receptor-like protein.
 
  
 0.738
Rta_24230
Conserved hypothetical protein.
     
 0.630
Rta_24220
Outer membrane protein precursor, TonB-dependent receptor-like protein.
 
  
 0.626
Rta_24240
Candidate hydroxyacid oxidase (Glycolate oxidase).
       0.580
Rta_21960
Conserved hypothetical protein.
  
     0.509
Rta_30130
Outer membrane protein precursor, TonB-dependent receptor-like protein.
 
  
 0.501
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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