Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_24290Conserved hypothetical protein. (351 aa)    
Predicted Functional Partners:
Rta_24280
Thiol oxidoreductase-like protein.
 
  
 0.979
Rta_24270
Iron-regulated protein-like protein.
 
    0.975
Rta_24300
Conserved hypothetical protein.
 
  
 0.975
Rta_24260
Iron-regulated membrane protein-like protein.
  
  
 0.805
Rta_08520
Transcriptional regulator, LuxR family-like protein.
  
     0.686
vapC
Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.624
Rta_08500
Candidate response regulator, atypical CheY.
  
     0.580
Rta_24230
Conserved hypothetical protein.
       0.580
Rta_24240
Candidate hydroxyacid oxidase (Glycolate oxidase).
       0.580
Rta_24250
Outer membrane protein precursor, TonB-dependent receptor-like protein.
       0.580
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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