rumA protein (Ramlibacter tataouinensis) - STRING interaction network

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rumA

Candidate 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M- 5-U1939)-methyltransferase); Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. (477 aa)

Predicted Functional Partners:

Rta_08740

0.630

lysU

0.594

Rta_24380

0.562

trmB

0.558

guaA

0.535

Rta_17580

0.483

rlmB

0.455

Rta_35660

0.455

prmA

0.450

Rta_28590

0.447

Your Current Organism:

Ramlibacter tataouinensis

NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Rta_08740	rumA	Rta_08740	Rta_24370	Conserved hypothetical protein.	Candidate 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M- 5-U1939)-methyltransferase); Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	0.630
Rta_08740	trmB	Rta_08740	Rta_15030	Conserved hypothetical protein.	Candidate tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.672
Rta_17580	Rta_28590	Rta_17580	Rta_28590	rRNA methylases-like protein.	Conserved hypothetical protein.	0.477
Rta_17580	rumA	Rta_17580	Rta_24370	rRNA methylases-like protein.	Candidate 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M- 5-U1939)-methyltransferase); Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	0.483
Rta_24380	rumA	Rta_24380	Rta_24370	Lactoylglutathione lyase (Methylglyoxalase)-like protein; (Aldoketomutase) (Glyoxalase I).	Candidate 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M- 5-U1939)-methyltransferase); Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	0.562
Rta_28590	Rta_17580	Rta_28590	Rta_17580	Conserved hypothetical protein.	rRNA methylases-like protein.	0.477
Rta_28590	rumA	Rta_28590	Rta_24370	Conserved hypothetical protein.	Candidate 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M- 5-U1939)-methyltransferase); Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	0.447
Rta_35660	guaA	Rta_35660	Rta_19730	16S rRNA m5C967 methyltransferase-like protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	Candidate GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	0.460
Rta_35660	prmA	Rta_35660	Rta_10000	16S rRNA m5C967 methyltransferase-like protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	Candidate ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.	0.406
Rta_35660	rumA	Rta_35660	Rta_24370	16S rRNA m5C967 methyltransferase-like protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	Candidate 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M- 5-U1939)-methyltransferase); Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	0.455
Rta_35660	trmB	Rta_35660	Rta_15030	16S rRNA m5C967 methyltransferase-like protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	Candidate tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.575
guaA	Rta_35660	Rta_19730	Rta_35660	Candidate GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	16S rRNA m5C967 methyltransferase-like protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	0.460
guaA	lysU	Rta_19730	Rta_28340	Candidate GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	Candidate lysyl-tRNA synthetase (Lysine--tRNA ligase); Belongs to the class-II aminoacyl-tRNA synthetase family.	0.915
guaA	rumA	Rta_19730	Rta_24370	Candidate GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	Candidate 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M- 5-U1939)-methyltransferase); Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	0.535
lysU	guaA	Rta_28340	Rta_19730	Candidate lysyl-tRNA synthetase (Lysine--tRNA ligase); Belongs to the class-II aminoacyl-tRNA synthetase family.	Candidate GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.	0.915
lysU	rumA	Rta_28340	Rta_24370	Candidate lysyl-tRNA synthetase (Lysine--tRNA ligase); Belongs to the class-II aminoacyl-tRNA synthetase family.	Candidate 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M- 5-U1939)-methyltransferase); Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	0.594
prmA	Rta_35660	Rta_10000	Rta_35660	Candidate ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.	16S rRNA m5C967 methyltransferase-like protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	0.406
prmA	rumA	Rta_10000	Rta_24370	Candidate ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.	Candidate 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M- 5-U1939)-methyltransferase); Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	0.450
rlmB	rumA	Rta_19180	Rta_24370	Candidate 23S rRNA (guanosine-2'-O-)-methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA.	Candidate 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M- 5-U1939)-methyltransferase); Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	0.455
rumA	Rta_08740	Rta_24370	Rta_08740	Candidate 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M- 5-U1939)-methyltransferase); Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	Conserved hypothetical protein.	0.630

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