Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_24480Candidate haloacetate dehalogenase H-1. (299 aa)    
Predicted Functional Partners:
Rta_23090
Aldehyde dehydrogenase (NAD+)-like protein; Belongs to the aldehyde dehydrogenase family.
  
 
 0.915
Rta_03970
(S)-2-haloacid dehalogenase-like protein.
  
 
 0.908
Rta_02880
Candidate Haloacetate dehalogenase.
  
  
 
0.906
Rta_24490
Candidate transporter.
 
     0.822
Rta_24470
Candidate tartrate dehydrogenase.
    
 0.806
pgsA
Cardiolipin synthase (CMP-forming); (Glycerophosphate phosphatidyltransferase) (3-phosphatidyl-1-glycerol-3-phosphate synthase); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.780
Rta_30410
Polyketide synthase-like protein.
  
 0.654
uvrC
Candidate excinuclease ABC, nuclease subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.642
Rta_24520
Conserved hypothetical protein.
       0.479
dbhB
Candidate DNA-binding protein HU-beta; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
     
 0.414
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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