Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_24490Candidate transporter. (297 aa)    
Predicted Functional Partners:
Rta_24480
Candidate haloacetate dehalogenase H-1.
 
     0.822
pgsA
Cardiolipin synthase (CMP-forming); (Glycerophosphate phosphatidyltransferase) (3-phosphatidyl-1-glycerol-3-phosphate synthase); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.784
Rta_24470
Candidate tartrate dehydrogenase.
       0.773
uvrC
Candidate excinuclease ABC, nuclease subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.652
Rta_24520
Conserved hypothetical protein.
       0.484
Rta_17010
Conserved hypothetical protein.
  
     0.457
dbhB
Candidate DNA-binding protein HU-beta; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.437
Rta_16180
malonyl-CoA decarboxylase (Malonyl-CoA carboxy-lyase)-like protein.
  
    0.419
Rta_03430
Candidate transporter.
  
     0.400
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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