Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_24640Histone deacetylase-like protein. (309 aa)    
Predicted Functional Partners:
Rta_01300
ATPase protein, AAA family-like protein.
 
 
 0.858
Rta_00880
Conserved hypothetical protein.
    
 0.795
Rta_37520
Proteins containing SET domain-like protein.
  
 0.772
cobB
NAD-dependent protein deacetylase, SIR2 family-like protein; Belongs to the sirtuin family. Class III subfamily.
    
 0.718
pcp
Candidate pyrrolidone-carboxylate peptidase (5-oxoprolyl- peptidase); Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.
    
   0.714
Rta_23560
Candidate glycerol uptake facilitator or water-selective channels; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.712
Rta_30450
Candidate membrane protein.
    
   0.695
htpG
Candidate heat shock protein, HSP90 family; Molecular chaperone. Has ATPase activity.
    
 0.660
Rta_05840
Conserved hypothetical protein.
 
 
 0.621
Rta_24620
Conserved hypothetical protein.
  
    0.587
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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